HsaEX0036814 @ hg19
Exon Skipping
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:25135]
Coordinates
chr9:130251723-130255176:+
Coord C1 exon
chr9:130251723-130251797
Coord A exon
chr9:130253494-130253574
Coord C2 exon
chr9:130255081-130255176
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCGTCTTCTGTTTAGATT
3' ss Score
8.68
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGCGCGATGCAGAAGGCTGCGTTCGAGGCACTCCAGGTGAAGAAAGACCTGATGCATCGGCAGATCAGGAGCCAG
Seq A exon
ATTAAGTTAATAGAAACTGAGTTATTGCAGCTGACACAGCTGGAGTTAAAGAGGAAGTCCCTGGACACAGAGTCACTCCAG
Seq C2 exon
GAGATGATCTCGGAGCAGCGCTGGGCCCTCAGCTCCCTGCTCCAGCAGCTGCTCAAAGAGAAGCAGCAGCGAGAGGAAGAGCTCCGGGAAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(13.3=52.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGATGCAGAAGGCTG
R:
CAGGATTTCCCGGAGCTCTTC
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)