GgaEX0012875 @ galGal3
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1930869-1933985:-
Coord C1 exon
chr17:1933911-1933985
Coord A exon
chr17:1932367-1932447
Coord C2 exon
chr17:1930869-1930964
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCATCTTCTGTTTAGATT
3' ss Score
8.19
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGTGAGATGCAGAAAGCTGCCTTTGAAGCTCTCCAAGTGAAGAAGGATCTTATGCACAGACAGATCAGGAACCAG
Seq A exon
ATTAAATTAATAGAAACAGAGTTATTGCAGCTGACACAGCTGGAGTTAAAGAGGCAAGAACTGGACACAGAGACGCTGCAG
Seq C2 exon
GGGATGATCATGGAGCAACGCCAAGCACTTGGTTACCTGCTGCAGCAGCTGCTCAAAGAAAAGAAGCAAAGGGAAGAAGAATTGCAACAAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(12.4=48.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGCCTTTGAAGCTCTCC
R:
CAGTATTTGTTGCAATTCTTCTTCCC
Band lengths:
159-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]