BtaEX0020832 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98219989-98223399:+
Coord C1 exon
chr11:98219989-98220063
Coord A exon
chr11:98221844-98221924
Coord C2 exon
chr11:98223304-98223399
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCGTCTTCTGTTTAGATT
3' ss Score
8.68
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGCGCCATGCAGAAGGCAGCCTTCGAGGCTCTCCAGGTGAAGAAGGACCTGATGCATCGGCAGATCCGGAAGCAG
Seq A exon
ATTAAGTTAATAGAAACTGAGTTATTGCAGTTGACACAGCTGGAGTTAAAGAGGAAATCCCTGGACACAGAGGCACTGCAG
Seq C2 exon
GAGATGATCTCGGAGCAGCGCTGGGCCCTAAGCTCGCTGCTCCAGCAGCTGCTCAAGGAGAAGACGCAGCGAGAAGAGGAGCTCCGGGAGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGGCTCTCCAGGTGAA
R:
CAGGATCTCCCGGAGCTCC
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development