DreEX0043991 @ danRer10
Exon Skipping
Gene
ENSDARG00000060683 | lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32270134-32272370:-
Coord C1 exon
chr5:32272296-32272370
Coord A exon
chr5:32270498-32270578
Coord C2 exon
chr5:32270134-32270229
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGTATGCTTGTATCCATAGATT
3' ss Score
9.08
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAGGAAATGCAGAAGGCCGCCTTTGAAGCCCTTCAGCTCCAGAAAGACAGCGTGCACGCTTATATCCGTAATCAG
Seq A exon
ATTAAACTCATAGAGGCAGAGTTAATGCAGCTCACAAAGCTGGAGGTTAAGAGGAGGAATTTGGACACTGAGAACCTGCAG
Seq C2 exon
GAGGAGCTGTCTGACCAGAGGACGGCTCTGACTGACCTGCTGCAGCAGTTACTCAAACAGAAGGATCAGAGGGAGGAGGAGCTCAGACTGGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGCAGAAGGCCGCCTTT
R:
AAGACCAGTCTGAGCTCCTCC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]