MmuEX0027176 @ mm10
Exon Skipping
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32933815-32936510:-
Coord C1 exon
chr2:32936436-32936510
Coord A exon
chr2:32935168-32935248
Coord C2 exon
chr2:32933815-32933910
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCGTCTTCTGTTTAGATT
3' ss Score
8.69
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGTGTAATGCAGAAGGCTGCCTTCGAGGCTCTCCAGGTGAAGAAGGACCTGATGCATCGGCAGATCAGGAACCAG
Seq A exon
ATTAGGCTAATAGAAACTGAGTTACTGCAGCTGACACAGCTGGAGTTAAAGAGGAAGTCCCTGGACACAGAGACGCTTCAG
Seq C2 exon
GAGATGGTCTCAGAGCAGCGCTGGGCACTCAGCAACCTGCTCCAGCAGCTCCTGAAAGAGAAGAAGCAGCGGGAAGAGGAACTCCATGGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGGCTCTCCAGGTGAA
R:
CAGGATGCCATGGAGTTCCTC
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types