HsaEX0036815 @ hg19
Exon Skipping
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:25135]
Coordinates
chr9:130255081-130258374:+
Coord C1 exon
chr9:130255081-130255176
Coord A exon
chr9:130257599-130257697
Coord C2 exon
chr9:130258243-130258374
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCCTGCTTCATTCCTGGCAGACG
3' ss Score
8.19
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAGATGATCTCGGAGCAGCGCTGGGCCCTCAGCTCCCTGCTCCAGCAGCTGCTCAAAGAGAAGCAGCAGCGAGAGGAAGAGCTCCGGGAAATCCTG
Seq A exon
ACGGAGTTAGAAGCCAAAAGTGAAACCAGGCAGGAAAATTACTGGCTGATTCAGTATCAACGGCTTTTGAACCAGAAGCCCTTGTCCTTGAAGCTGCAA
Seq C2 exon
GAAGAGGGGATGGAGCGCCAGCTGGTGGCCCTCCTGGAGGAGCTGTCGGCTGAGCACTACCTGCCCATCTTTGCGCACCACCGCCTCTCACTGGACCTGCTGAGCCAAATGAGCCCAGGGGACCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(64.4=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGATCTCGGAGCAGCG
R:
CGCAAAGATGGGCAGGTAGTG
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)