MmuEX6100670 @ mm10
Exon Skipping
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32929574-32933910:-
Coord C1 exon
chr2:32933815-32933910
Coord A exon
chr2:32932091-32932189
Coord C2 exon
chr2:32929574-32929705
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTAGCTTCTGTTCTTGGCAGGCG
3' ss Score
6.07
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGATGGTCTCAGAGCAGCGCTGGGCACTCAGCAACCTGCTCCAGCAGCTCCTGAAAGAGAAGAAGCAGCGGGAAGAGGAACTCCATGGCATCCTG
Seq A exon
GCGGAATTAGAGGCCAAGAGCGAAACGAAGCAGGAAAATTACTGGCTCATCCAGTACCAACGGCTTTTAAACCAGAAGCCTTTGTCCTTGAAACTGCAG
Seq C2 exon
GAAGAAGGCATGGAGCGACGGCTGGTGGCCCTGCTGGTGGAGCTTTCTGCAGAGCACTACCTGCCCCTCTTCGCCCACCACCGCATCTCACTGGACATGCTGAGCCGAATGAGCCCCGGAGATCTGGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792-'43-45,'43-43,45-45
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(64.4=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAGCTCCTGAAAGAGA
R:
CTCATTCGGCTCAGCATGTCC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types