BtaEX6046228 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98223304-98225348:+
Coord C1 exon
chr11:98223304-98223399
Coord A exon
chr11:98224670-98224768
Coord C2 exon
chr11:98225217-98225348
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTTCCTTCTTGGCAGACG
3' ss Score
8.48
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGATGATCTCGGAGCAGCGCTGGGCCCTAAGCTCGCTGCTCCAGCAGCTGCTCAAGGAGAAGACGCAGCGAGAAGAGGAGCTCCGGGAGATCCTG
Seq A exon
ACGGAGTTAGAAGCCCAAAGCGAAACCAAGCAGGAGAATTACTGGCTGATTCAGTATCAGCGGCTCTTGAACCAGAAACCCTTGTCCTTGAAGCTGCAG
Seq C2 exon
GAAGAAGGCTTGGAGCGCCCGCTGGTGGCCCTCCTGGTGGAGCTGTCGGCCGAGCACTACCTGCCTATCTTCGCCCACCACCGCCTCTCACTGGCCATGCTGAGCCGGATGGGCCCTGCGGACTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844-'23-34,'23-32,25-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(63.8=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGATCTCGGAGCAGCG
R:
TGGGCGAAGATAGGCAGGTAG
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]