GgaEX0012877 @ galGal3
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1929598-1930964:-
Coord C1 exon
chr17:1930869-1930964
Coord A exon
chr17:1930249-1930347
Coord C2 exon
chr17:1929598-1929729
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGAATGAGTTTGTTTTTCAGTTG
3' ss Score
5.63
5' ss Seq
CAGGTTGCT
5' ss Score
-0.98
Exon sequences
Seq C1 exon
GGGATGATCATGGAGCAACGCCAAGCACTTGGTTACCTGCTGCAGCAGCTGCTCAAAGAAAAGAAGCAAAGGGAAGAAGAATTGCAACAAATACTG
Seq A exon
TTGGAAATGGAAGCAAAGAGTGAAACCAAACAGGAGAACTACTGGCTGATCCAGTACCAGCGCCTGCTGAACCAGAAGCCACTCTCCCTGAAACTCCAG
Seq C2 exon
GAGGAGGGCTTGGAGAAGCAGCTGGTGAACCTTTTAATCGAGCTGTCAGCTGAACAGTATGTGCCTGTCTTTGCACACCATCGAATTTCCTTGGAAATGCTCAGCACCATGACTGCCAGTGACCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(66.1=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATCATGGAGCAACGCCA
R:
TCGATGGTGTGCAAAGACAGG
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]