DreEX6011793 @ danRer10
Exon Skipping
Gene
ENSDARG00000060683 | lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32268073-32270229:-
Coord C1 exon
chr5:32270134-32270229
Coord A exon
chr5:32268286-32268384
Coord C2 exon
chr5:32268073-32268204
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTGCGATTCAGATG
3' ss Score
8.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGGAGCTGTCTGACCAGAGGACGGCTCTGACTGACCTGCTGCAGCAGTTACTCAAACAGAAGGATCAGAGGGAGGAGGAGCTCAGACTGGTCTTG
Seq A exon
ATGGAGATTGAGAAGAAGAGTGAATCCAACCAGCAGAACTACTGGATGATCCAGTATCAGAGGCTTCTGGATGCCAAACCACTGTCTCTGCGCATGCAG
Seq C2 exon
GAAGCAGCGGTAGACAGAGATCTAGGGAATCTACTGTGCAAACTCTCAGCTCAGCACTACCTGCCAATCATAGCTCACCACCGCATCACTGCTGAGGCCTTAAGAAGAATGACTGCCAAAGACCTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(67.8=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTGTCTGACCAGAGG
R:
TGCGGTGGTGAGCTATGATTG
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]