HsaEX0047873 @ hg19
Exon Skipping
Gene
ENSG00000123143 | PKN1
Description
protein kinase N1 [Source:HGNC Symbol;Acc:9405]
Coordinates
chr19:14544135-14552255:+
Coord C1 exon
chr19:14544135-14544354
Coord A exon
chr19:14545402-14545466
Coord C2 exon
chr19:14551955-14552255
Length
65 bp
Sequences
Splice sites
3' ss Seq
GGTCCCTCCCGCCTTCCCAGTCC
3' ss Score
6.8
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GGCCGCTGGGGCCGGAGGGCGCGGCGCGGGGACGCGGCGGCCTGGCCAGGCGAGGCGGGAGCCGAGCAGGCCGGAGCGGGCCGCGCGCCGGGGAGGGTCGCGCCGCGCCCGCCCCCTCCCCGCCACGCCCGGGGCGCACGCGCGCTCCTCTGGCCGCCCCTCCCTCCGCGCGGGGACCCCTGGCGGGCGGCAGGAGGACATGGCCAGCGACGCCGTGCAG
Seq A exon
TCCTGCTGATGGCCTGCCGGCCTTGCCGAGGAGCTGGGCGTATCTGGTGTTGCCGATCACACAAG
Seq C2 exon
AGTGAGCCTCGCAGCTGGTCCCTGCTAGAGCAGCTGGGCCTGGCCGGGGCAGACCTGGCGGCCCCCGGGGTACAGCAGCAGCTGGAGCTGGAGCGGGAGCGGCTGCGGCGGGAAATCCGCAAGGAGCTGAAGCTGAAGGAGGGTGCTGAGAACCTGCGGCGGGCCACCACTGACCTGGGCCGCAGCCTGGGCCCCGTAGAGCTGCTGCTGCGGGGCTCCTCGCGCCGCCTCGACCTGCTGCACCAGCAGCTGCAGGAGCTGCACGCCCACGTGGTGCTTCCCGACCCGGCGGCCACCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123143-'0-2,'0-0,1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=1.000 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218511=HR1=WD(100=68.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACATGGCCAGCGAC
R:
AGGTTCTCAGCACCCTCCTTC
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)