RnoEX0066432 @ rn6
Exon Skipping
Gene
ENSRNOG00000004131 | Pkn1
Description
protein kinase N1 [Source:RGD Symbol;Acc:69308]
Coordinates
chr19:24824583-24831500:-
Coord C1 exon
chr19:24831306-24831500
Coord A exon
chr19:24830341-24830405
Coord C2 exon
chr19:24824583-24824883
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCTGTACCCCTCTTCCCCAGTCC
3' ss Score
7.92
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ATCCTGCAGCCGCTGGGGCCCGAGGGCGCAGCTCGGCGGAGGCCTGGCCAGGCCGGGCCGAGCGCAGCAGGCCGGATCGCGCAGCGCGCCAGGGAAGGTCTGGGCTCCGCGCTTCCCGCCCCACACGCCGACGCGCTCGCAAGCCCTCCCTCGGCGCTGGGACCCCTGGCGGACATGGCCGGCGACGCCGTGCAG
Seq A exon
TCCTGCTGATGGCCTGCCGGCCTTGCCGAGGAGCTGGGCGTATCTGGTGCTGCCGATCTCACAAG
Seq C2 exon
AGTGAACCTCGCAGCTGGTCACTGCTGGAGCAGCTGGGTCTGGCTGGGGCAGACCTGGCAGCCCCTGGGGTGCAGCAGCAGCTGGAGTTAGAGCGAGAGCGGCTGAAGCGGGAAATCCGAAAAGAGCTGAAGCTGAAGGAGGGCGCTGAGAACCTGAGGCGGGCCACCACTGACCTGGGCCGCAGCTTGGCCCCTGTGGAACTGCTGCTGAGGGGCTCCGCTAGACGGCTTGACTTGCTGCACCAGCAGCTGCAGGAGCTGCATGCACATGTGGTGCTGCCCGACCCTACAGCGGGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004131_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218511=HR1=WD(100=68.3)
Main Inclusion Isoform:
ENSRNOT00000005770fB10793
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCAAGCCCTCCCTCG
R:
CTTCAGCCGCTCTCGCTCTAA
Band lengths:
168-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]