MmuEX0035429 @ mm10
Exon Skipping
Gene
ENSMUSG00000057672 | Pkn1
Description
protein kinase N1 [Source:MGI Symbol;Acc:MGI:108022]
Coordinates
chr8:83692636-83699179:-
Coord C1 exon
chr8:83698967-83699179
Coord A exon
chr8:83698008-83698072
Coord C2 exon
chr8:83692636-83692936
Length
65 bp
Sequences
Splice sites
3' ss Seq
TCTGTACCCGTCTTCCCCAGTCC
3' ss Score
8.09
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTGACCCACCCTGCAGCCGCTGGGGCCGGAGGGCGCAGCTCGGCGGAGGCCTGGCCAGGCCGGGCCGAGCGCAGCAGGCCGGAGCGCGCCGCGCGCCTGGGAGGGTCTGGGCGCCGCGCCTCCCGCCGCACCCGCCCGCGCGCTCGCAAGCCCTTCCTTGGCGCTGGGACCCCTGGCGGGCGGCCGGAGGACATGGCCGGCGACGCCGTACAG
Seq A exon
TCCTGCTGATGGCCTGCCGGCCTTGCCGAGGAGCTGGGCGTATCTGGTGCTGCCGATCTCACAAG
Seq C2 exon
AGTGAGCCTCGAAGCTGGTCGCTGCTGGAACAGCTGGGTCTGGCTGGGGCTGACCTGGCAGCCCCCGGGGTGCAGCAACAGCTGGAGTTAGAGCGAGAGCGACTGAAGCGGGAGATACGGAAGGAGCTGAAGCTGAAGGAGGGCGCTGAGAACCTGAGGCGAGCCACCACTGACCTGGGCCGTAGCCTGGCCCCTGTGGAGCTGCTGCTGCGGGGCTCCGCTCGACGCCTAGACTTACTGCACCAGCAGCTGCAGGAGCTGCATGCACATGTGGTGCTGCCTGACCCTGCAGCTGGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057672-'0-9,'0-2,1-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218511=HR1=WD(100=68.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCAAGCCCTTCCTTGG
R:
TCAGTCGCTCTCGCTCTAACT
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types