HsaEX0055017 @ hg38
Exon Skipping
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31135580-31136713:-
Coord C1 exon
chr12:31136621-31136713
Coord A exon
chr12:31135954-31136182
Coord C2 exon
chr12:31135580-31135709
Length
229 bp
Sequences
Splice sites
3' ss Seq
CCGATAACCTCTTCTTCCAGTTC
3' ss Score
6.86
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
AGGGGAGAATGCTGACTATGTAGAACAGGCTATAATTCAAACAGTAAGAACAAACTTCCCAGAGACATGGATGTGGGACCTCGTCAGTGTCGA
Seq A exon
TTCCTCAGGCTCTGCCAATCTTTCGTTCCTCATTCCTGATACGATAACCCAATGGGAGGCAAGTGGCTTTTGTGTGAATGGCGACGTTGGATTTGGCATTTCCTCTACAACCACTCTAGAAGTCTCCCAACCTTTCTTTATTGAAATTGCCTCACCCTTTTCGGTTGTTCAAAATGAACAATTTGATTTGATTGTCAATGCCTTCAGCTACCTGAATACATGTGTAGAG
Seq C2 exon
ATTTCTGTTCAAGTGGAGGAGTCTCAGAATTATGAAGCAAATATTAATACCTGGAAAATCAATGGCAGTGAGGTTATTCAAGCTGGAGGGAGGAAAACAAACATCTGGACTATTATACCTAAGAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=28.1)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAGAATGCTGACTATGT
R:
AGTCCAGATGTTTGTTTTCCTCCC
Band lengths:
204-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development