HsaEX0056415 @ hg38
Exon Skipping
Gene
ENSG00000168079 | SCARA5
Description
scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
Coordinates
chr8:27909663-27966542:-
Coord C1 exon
chr8:27966414-27966542
Coord A exon
chr8:27921571-27922245
Coord C2 exon
chr8:27909663-27909743
Length
675 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTTCCTCCTCCGCAGTGT
3' ss Score
10.86
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
GTCCATGTCACAAACGGCGGGCAAGCATCTGCTGTACCCAGCTGGGGTCCCTGTCGGCCCTGAAGCATGCTGTCCTGGGGCTCTACCTGCTGGTCTTCCTGATTCTTGTGGGCATCTTCATCTTAGCAG
Seq A exon
TGTCCAGGCCGCGCAGCTCCCCTGACGACCTGAAGGCCCTGACTCGCAATGTGAACCGGCTGAATGAGAGCTTCCGGGACTTGCAGCTGCGGCTGCTGCAGGCTCCGCTGCAAGCGGACCTGACGGAGCAGGTGTGGAAGGTGCAGGACGCGCTGCAGAACCAGTCAGACTCGTTGCTGGCGCTGGCGGGCGCAGTGCAGCGGCTGGAGGGCGCGCTGTGGGGGCTGCAGGCGCAGGCGGTGCAGACCGAGCAGGCGGTGGCCCTGCTGCGGGACCGCACGGGCCAGCAGAGCGACACGGCGCAGCTGGAGCTCTACCAGCTGCAGGTGGAGAGCAACAGTAGCCAGCTGCTGCTGAGGCGCCACGCGGGCCTGCTGGACGGGCTGGCGCGCAGGGTGGGCATCCTGGGCGAGGAGCTGGCCGACGTGGGCGGCGTGCTGCGCGGCCTCAACCACAGCCTGTCCTACGACGTGGCCCTCCACCGCACGCGGCTGCAGGACCTGCGGGTGCTGGTGAGCAACGCCAGCGAGGACACGCGCCGCCTGCGCCTGGCGCACGTAGGCATGGAGCTGCAGCTGAAGCAGGAGCTGGCCATGCTCAACGCGGTCACCGAGGACCTGCGCCTCAAGGACTGGGAGCACTCCATCGCACTGCGGAACATCTCCCTCGCGAAAG
Seq C2 exon
GGCCACCGGGACCCAAAGGTGATCAGGGGGATGAAGGAAAGGAAGGCAGGCCTGGCATCCCTGGATTGCCTGGACTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168079-'6-14,'6-13,8-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.055 C2=0.982
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(3.7=4.5)
A:
PF0139113=Collagen=PU(3.6=0.9)
C2:
PF0139113=Collagen=FE(49.1=100),PF0139113=Collagen=PU(10.0=21.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTCACAAACGGCGG
R:
CTCGAAGTCCAGGCAATCCAG
Band lengths:
209-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development