HsaEX0056415 @ hg19
Exon Skipping
Gene
ENSG00000168079 | SCARA5
Description
scavenger receptor class A, member 5 (putative) [Source:HGNC Symbol;Acc:28701]
Coordinates
chr8:27767180-27824059:-
Coord C1 exon
chr8:27823931-27824059
Coord A exon
chr8:27779088-27779762
Coord C2 exon
chr8:27767180-27767260
Length
675 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTTCCTCCTCCGCAGTGT
3' ss Score
10.86
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
GTCCATGTCACAAACGGCGGGCAAGCATCTGCTGTACCCAGCTGGGGTCCCTGTCGGCCCTGAAGCATGCTGTCCTGGGGCTCTACCTGCTGGTCTTCCTGATTCTTGTGGGCATCTTCATCTTAGCAG
Seq A exon
TGTCCAGGCCGCGCAGCTCCCCTGACGACCTGAAGGCCCTGACTCGCAATGTGAACCGGCTGAATGAGAGCTTCCGGGACTTGCAGCTGCGGCTGCTGCAGGCTCCGCTGCAAGCGGACCTGACGGAGCAGGTGTGGAAGGTGCAGGACGCGCTGCAGAACCAGTCAGACTCGTTGCTGGCGCTGGCGGGCGCAGTGCAGCGGCTGGAGGGCGCGCTGTGGGGGCTGCAGGCGCAGGCGGTGCAGACCGAGCAGGCGGTGGCCCTGCTGCGGGACCGCACGGGCCAGCAGAGCGACACGGCGCAGCTGGAGCTCTACCAGCTGCAGGTGGAGAGCAACAGTAGCCAGCTGCTGCTGAGGCGCCACGCGGGCCTGCTGGACGGGCTGGCGCGCAGGGTGGGCATCCTGGGCGAGGAGCTGGCCGACGTGGGCGGCGTGCTGCGCGGCCTCAACCACAGCCTGTCCTACGACGTGGCCCTCCACCGCACGCGGCTGCAGGACCTGCGGGTGCTGGTGAGCAACGCCAGCGAGGACACGCGCCGCCTGCGCCTGGCGCACGTAGGCATGGAGCTGCAGCTGAAGCAGGAGCTGGCCATGCTCAACGCGGTCACCGAGGACCTGCGCCTCAAGGACTGGGAGCACTCCATCGCACTGCGGAACATCTCCCTCGCGAAAG
Seq C2 exon
GGCCACCGGGACCCAAAGGTGATCAGGGGGATGAAGGAAAGGAAGGCAGGCCTGGCATCCCTGGATTGCCTGGACTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168079-'2-6,'2-3,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.982
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(3.7=4.5)
A:
PF129112=OppC_N=PD(42.6=8.8),PF0139113=Collagen=PU(3.6=0.9)
C2:
PF0139113=Collagen=FE(48.2=100),PF0139113=Collagen=PU(11.5=25.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTCACAAACGGCGG
R:
CTCGAAGTCCAGGCAATCCAG
Band lengths:
209-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)