RnoEX0078356 @ rn6
Exon Skipping
Gene
ENSRNOG00000014398 | Scara5
Description
scavenger receptor class A, member 5 [Source:RGD Symbol;Acc:1306539]
Coordinates
chr15:49101752-49149785:+
Coord C1 exon
chr15:49101752-49101880
Coord A exon
chr15:49142976-49143650
Coord C2 exon
chr15:49149705-49149785
Length
675 bp
Sequences
Splice sites
3' ss Seq
ACTCCTCACCTCTTCCACAGTGT
3' ss Score
9.38
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTCCATGTCACAAGCGGCGGGCGGGTGGCTGCTGCACACAGCTGGGCTCCCTGTCAGCGCTGAAGCATGCGGTCCTGGGGCTGTATCTTCTGGTCTTCCTGACTCTTGTGGGTGTCTTCATCTTAGCAG
Seq A exon
TGTCCCGGCCTCGCAGCTCCCCAGATGACTTGAAGGCGCTGACTAGGAACATCAACCGGCTGAATGAAAGCTTCCGGGACATGCAGCTACGGCTGCTGCAGGCTCCGTTGCAGGCAGACCTGACGGAACAGGTGTGGAAGGTTCAGGATGCACTGCAGAACCAGACAGACTCACTGTTGGCCCTGGCAGGCTTGGTGCAGAGACTGGAGGGCACACTGTGGGGGCTGCACGCGCAGGCTGCACAGACTGAGCAGGCGGTGGCCCTGCTGCGTGACCGAACAGGACAGCAGAGCGACTCCGCACAGCTGGAACTCTACCAGTTGCAGGTGGAAAGCAATCGAAGCCAGCTGCTGCTGCAGCGGCACGCAGGCCTGCTGGATGGGCTAGCACACAGGGTGGGGGTCCTGGGCGAGGAGCTGGCTGATGTGGGTGGTGCACTTCGTGGCCTCAACCACAGCCTATCCTATGACGTGGCTCTGCACAGCACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACACACGCCGTATGAGGCTGGTGCACATGGACATGGAGATGCAACTCAAGCAGGAGCTGGCCACACTCAATGTGGTGACTGAGGACCTGCGTCTGAAGGACTGGGAGCACTCCATCGCCCTGAGGAACATCACCCTTGCCAAAG
Seq C2 exon
GACCACCAGGACCCAAAGGTGACCAAGGGAATGAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGGACTTCCTGGATCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014398_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(2.5=0.9)
C2:
PF0139113=Collagen=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGTCACAAGCGGCG
R:
TCGAGATCCAGGAAGTCCAGG
Band lengths:
209-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]