DreEX6043550 @ danRer10
Exon Skipping
Gene
ENSDARG00000010425 | scara5
Description
scavenger receptor class A, member 5 (putative) [Source:ZFIN;Acc:ZDB-GENE-041210-258]
Coordinates
chr20:1347224-1351303:-
Coord C1 exon
chr20:1351118-1351303
Coord A exon
chr20:1349284-1349772
Coord C2 exon
chr20:1347224-1347304
Length
489 bp
Sequences
Splice sites
3' ss Seq
CCCTCACTGTATATGACCAGGGT
3' ss Score
4.95
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TATCAAAAAGCCATGCGTCCTGGAGACGTGAGGAAGCACTTCTGGAGAATGTGACGCGGCTAGGGGAGCAGTCGGAGACCCTGCAGATGTCTCTCAGCCAGATCCCGTCCCAGAGCGACCTTCTGGAGAACATCTGGAAGCTGGAGAGCCTCTTTCACAACCACACTGAACAGCTGAGGCTGCTGG
Seq A exon
GGTTACTGACACAGGGTCTGGAGCGGGACATTAAAGACCTGCAGGCCTTCGCAGAGCACACCACTGACTCTGTGGCTCAGCTGTGGGATCATCTGTCCATGATCAGCCACTCCAGCCAGAGAAATAGCACCCACCTCGGGGACGAGCTGGCCTCCACTGCCGGCTCCATCCGAGAGCAGGACGCACTCCTAAAGACAATGGTGGGGAACGTGGAGACTTTGCAGGAGCGTCTGGAGGATATGGGCTGGACGCTGCAGACGCTGAACCATTCGCTCGGGGGGGACGTGAGTCTGCACCAGATCAAAATCTATGAGCTGCAGGAGAAAATTGTAAATGTGACGCACGACACTTTAGGCATGAAGATCACACAAACACACCTGGAGGATCAGCTCCGGAACGAGATTCAGGTCCTGAACGTGGTCACGGCAGATCTGAGGCTGAAGGAGTGGGAGCACTCCATGGCTCTCAAAAATCTGACCATATTTCAAG
Seq C2 exon
GACCACCAGGGCCGAAGGGTGAGAAGGGTGATGTTGGACCCCTGGGACCAGACGGTATTCCGGGTTGGATTGGACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010425-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.134 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(3.6=1.2)
C2:
PF0139113=Collagen=FE(49.1=100),PF0139113=Collagen=PU(4.8=10.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGCCATGCGTCCTGGAG
R:
CTCTTGGTCCAATCCAACCCG
Band lengths:
263-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]