MmuEX6042158 @ mm9
Exon Skipping
Gene
ENSMUSG00000022032 | Scara5
Description
scavenger receptor class A, member 5 (putative) [Source:MGI Symbol;Acc:MGI:1918395]
Coordinates
chr14:66308605-66357341:+
Coord C1 exon
chr14:66308605-66308733
Coord A exon
chr14:66349358-66350032
Coord C2 exon
chr14:66357261-66357341
Length
675 bp
Sequences
Splice sites
3' ss Seq
ACTCCTCACCTCTTCCACAGTGT
3' ss Score
9.38
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
GTCCATGTCACAAACGGCGGGCGGGAGGCTGCTGTACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCTGTATCTTCTGGTCTTCCTGATTCTTGTGGGTATCTTCATCTTAGCAG
Seq A exon
TGTCCCGGCCTCGAAGCTCCCCAGATGACTTGAAGGCGCTGACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAACCAGACAGACTCGTTGTTGGCCCTGGCCGGCTTGGTGCAGAGGCTGGAGGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCGATGGCCCTGCTGCGGGACCGAACAGGACAGCAGAGTGACTCCGCACAGCTGGAACTCTACCAGCTGCAGGTGGAAAGCAATCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCTGCTGGATGGGCTAGCACGCAGGGTGGGGGTCCTGGGGGAGGAGCTGGCTGACGTGGGCGGTGCGCTCCGTGGTCTCAACCACAGCCTGTCCTATGACGTGGCCCTGCACAGCACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACACTCGCCGTATGCGGCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTCAACGTGGTGACCGAGGACCTGCGTCTGAAGGACTGGGAACACTCCATCGCCTTGAGGAACATCACCCTTGCCAAAG
Seq C2 exon
GGCCACCGGGACCCAAAGGTGACCAAGGAAATGAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGGACTTCCTGGATCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022032-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=1.000
Domain overlap (PFAM):
C1:
PF129112=OppC_N=PU(55.3=59.1)
A:
PF129112=OppC_N=PD(42.6=8.8),PF0139113=Collagen=PU(3.5=0.9)
C2:
PF0139113=Collagen=FE(50.0=100),PF0139113=Collagen=PU(10.5=21.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTCACAAACGGCGG
R:
TCGAGATCCAGGAAGTCCAGG
Band lengths:
208-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: