GgaEX6032583 @ galGal3
Exon Skipping
Gene
ENSGALG00000016580 | SCARA5
Description
NA
Coordinates
chr3:107939747-107948264:+
Coord C1 exon
chr3:107939747-107939875
Coord A exon
chr3:107944024-107944698
Coord C2 exon
chr3:107948184-107948264
Length
675 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTCTCTCCCTTATAGTCT
3' ss Score
10.96
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTGCTGGGCACAGGATGAAGGCAGCCGGGCGCTGCGGGCGGCTGGGCTCCCTGGCAGCACTCAAGTATGCGGTGCTGGGGCTCTACCTCCTCGTCTTCCTCATCCTCGTCGGCGTCTTCATCCTCGCAG
Seq A exon
TCTCCCGGCCTCAGACTTCCCCTGAGGACCTGAAGGCATTGATGGGGAATGTGAACCGCCTCAATGAGAGTTTCCGGGACATGCAACTGAAGCTGCTGCACCTCCCTCTGAAGGGGGATGTGATGGATCACATCTGGAGGCTCCAGGACCTTCTCCAGAACCATTCAGACTCCTTGTTCCTCATGACGGGCTCGCTGCAGAAGCTGGAAGGCCTCCTGTGGAGCCTGCAGACCCAGGCTGGCCAAACCAATAGGGCCGTGGCCAACCTGTGGGACAGCCTGGCCCAGCAGGGCGATGCAGCCCAGCAGGAGCTCTACAAGCTCTCGGTGGAAGGCAACAACAGCCGGCTGCTGCTGCAACACCACGAGCACCTCTTGAGCCACTTGGGCAGCCGGCTGGAGGGCCTGAGCGAGCAGGTGACAGCCGTCAGTGGAGCTGCCGATGCCATGAACAGGACCTTCTCCTATGATGTCAACATCCACCACAGCCGTATCCAGGACCTGCAGGTGCTGATCAGCAACGCCACCGAGGACGCCCGGCGGATGAGGCTTATCCACATCGCCATGGAGGAGCAGCTGAAGCACGAGCTGGCCATCCTCGGCAATGTGACGGAGGACCTGCGGCTCAAGGACTGGGAGCACTCCATTGCACTGAAGAACATCTCCATCATACGGG
Seq C2 exon
GGCCCCCAGGACCCAAGGGAGACCCGGGCCATGAAGGGATGGAGGGGGAGCCTGGCCGGCCTGGCCCACCCGGCCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016580-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=1.000
Domain overlap (PFAM):
C1:
PF108053=DUF2730=PU(21.6=47.7)
A:
PF108053=DUF2730=PD(77.3=33.2),PF0139113=Collagen=PU(3.8=0.9)
C2:
PF0139113=Collagen=FE(50.9=100),PF0139113=Collagen=PU(1.7=3.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGCACAGGATGAAGG
R:
CCAGGCTCCCCCTCCATC
Band lengths:
182-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]