BtaEX0031490 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019636 | SCARA5
Description
Bos taurus scavenger receptor class A, member 5 (putative) (SCARA5), mRNA. [Source:RefSeq mRNA;Acc:NM_001102499]
Coordinates
chr8:10694211-10754364:+
Coord C1 exon
chr8:10694211-10694339
Coord A exon
chr8:10739927-10740601
Coord C2 exon
chr8:10754284-10754364
Length
675 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCTCCATCTCCGCAGTGT
3' ss Score
10.35
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTCCATGCCACAAAGGACGAGCAGGTGGCTGCTGTACCCAGCTGGGCTCCCTGTCAGCCCTGAAGCATGCAGTCCTCGGGCTCTACCTGCTGGTCTTTCTGATTCTCGTGGGCATCTTCATCTTAGCAG
Seq A exon
TGTCCAGGCCCCGGAGCTCCCCGGACGACCTGAAGGCGCTGACTCGGAACGTGAACCGGCTGAACGAGAGCTTCCGGGACTTGCAGCTGCGGCTGCTGCAGGCCCCGCTGCAAGGGGAGCTGAGCGAGCAGGTGTGGAAGGCGCACGACGCGCTGCAGAACCAGTCGGACTCGCTGCTGGCGCTGGCGGGCGCGGTGCAGCGCCTGGAGGGGGCGCTGTGGGGGCTACAGGCCCAGGCGGCGCAGAGCGAGCAGGCGGTGGTCTTGCTGCGGGAGCGCGCGGCCCAGCAGAGCGACGCGGCGCAGCTGGAGCTCTACCAGCTGCAGGTGGACAGCAACCGCAGCCAGCTGCTGCTGCGGCGCCACGCCGGCCTGCTGGACGGGCTGGCGCGCCGGGTGGGCGCCCTGAGCGACGAGCTGGCGGACGTGGGCGGCGCGCTGCGCGGCCTCAACCTCAGCCTATCCTACGACGTGGCCCTGCAGGGCACGCGGCTGCGAGACCTGCGCGTGCTGGTGAGCAACGCCAGCGAGGACGCGCGCCGCTTGCGCCTGGCGCACCGGGGCTTGGAGCTGCAGCTCAAGCAGGAGCTGGCCGTGCTCAACGGTGTCACCGAGGACCTACGCCTCAAGGATTGGGAGCACTCCATCGCGCTGCGCAACATTACCCTGGCCAAAG
Seq C2 exon
GACCACCGGGCCCCAAAGGTGATCCGGGGGATGCAGGGAAAGAAGGCGAGCCTGGAATCCCTGGACTACCTGGACTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019636_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(3.7=0.9)
C2:
PF0139113=Collagen=FE(50.0=100),PF0139113=Collagen=PU(14.5=32.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGCCACAAAGGACGAG
R:
TCGAAGTCCAGGTAGTCCAGG
Band lengths:
209-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development