HsaEX0061137 @ hg38
Exon Skipping
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr8:100231156-100239404:+
Coord C1 exon
chr8:100231156-100231288
Coord A exon
chr8:100233411-100233537
Coord C2 exon
chr8:100239240-100239404
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTTCCATTGCATTATGCCAGAGC
3' ss Score
3.88
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGAAAAAACATTTAAAGCCCTTAAGGAAGAAGGAAATCAATGTGTAAATGACAAAAACTATAAAGACGCCCTCAGTAAATACAGCGAATGCTTAAAGATTAACAATAAGGAATGTGCCATATATACAAACAG
Seq A exon
AGCTCTCTGTTACTTGAAGCTGTGCCAGTTTGAAGAAGCAAAGCAGGACTGTGATCAGGCACTTCAGCTAGCTGATGGGAACGTGAAAGCCTTCTATAGACGAGCTCTGGCTCATAAAGGACTCAAG
Seq C2 exon
AATTATCAGAAAAGCTTAATTGATCTCAATAAAGTTATCCTACTAGATCCAAGTATTATTGAGGCAAAGATGGAACTGGAAGAGGTAACTAGACTCCTTAATCTTAAGGATAAGACAGCACCATTCAACAAAGAAAAGGAGAGAAGGAAAATTGAGATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450_MULTIEX1-7/9=6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=93.3)
A:
PF134141=TPR_11=PD(36.8=58.1),PF0051523=TPR_1=PU(41.2=32.6)
C2:
PF0051523=TPR_1=PD(52.9=32.7)
Main Skipping Isoform:
ENST00000251809fB26684
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTAAGGAAGAAGGAAATCA
R:
TCTTTGTTGAATGGTGCTGTCT
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development