RnoEX0084991 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75046170-75052041:+
Coord C1 exon
chr7:75046170-75046302
Coord A exon
chr7:75048366-75048492
Coord C2 exon
chr7:75051898-75052041
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTGCATTGTGCCAGGGC
3' ss Score
6.99
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGAAAAAATGTTTCAAGCCCTTAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGACGCCATTAGTAAATACAACGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
Seq A exon
GGCTCTCTGTTACTTGAAGCTGGGACAGTTTGAAGAGGCAAAGCTGGACTGTGACAAGGCACTTCAGATAGACAGCAAGAATGTGAAAGCCTCTTACAGACTCGAGCTCGCCCAGAAAGGACTCGAG
Seq C2 exon
AATTGCCGGGAAAGAGTGGCGGATCCCAGTCAGGTTGTCCTCCTAAGCCCAGATTCCAGTGAAGCAGCCAGGCACCTGGACACTAAGAATGACACAGCACCTCCCAGCAGAGAGAGGGAGAGGAGGAGAATTGAAATCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'26-22,'26-19,28-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.722
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=93.3)
A:
PF134141=TPR_11=PD(36.8=58.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCCCTTAAGGAAGAAGGA
R:
CTCCTCTCCCTCTCTCTGCTG
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]