MmuEX6053252 @ mm9
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36153864-36163098:+
Coord C1 exon
chr15:36153864-36153996
Coord A exon
chr15:36156891-36157017
Coord C2 exon
chr15:36162958-36163098
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTTGCATTATGTGTGCCAGGGC
3' ss Score
5.88
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGAAAAAATGTTTCAAGCCCTCAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGATGCCATTAGTAAATACAATGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
Seq A exon
GGCTCTCTGTTACCTGAAGCTGGGCCAGTTTGAAGAGGCAAAGCTGGACTGTGAGCAGGCGCTTCAGATAGACGGCGAGAATGTGAAAGCCAGCCACAGACTAGCGCTCGCCCAGAAAGGACTCGAG
Seq C2 exon
AACTGCCGGGAAAGCGGGGTGGACCCCAGTCAAGTCCTCCTAAGCCCAGATTCCAGTGAAGCCGCCCGGCACCTGGACACTAAGAATGACACAGCACCTCCCAGCAAAGGAAGGGAGAGGAGGAGAATCCAAGTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.209 C2=0.915
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=93.3)
A:
PF134141=TPR_11=PD(36.8=58.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCCCTCAAGGAAGAAGGA
R:
TCCTCCTCTCCCTTCCTTTGC
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: