HsaEX0061142 @ hg19
Exon Skipping
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:11212]
Coordinates
chr8:101226047-101237567:+
Coord C1 exon
chr8:101226047-101226146
Coord A exon
chr8:101232507-101232659
Coord C2 exon
chr8:101237401-101237567
Length
153 bp
Sequences
Splice sites
3' ss Seq
AATATTTTTGTCTTCTTTAGGGC
3' ss Score
11.36
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAGTGAAATTGCAGATGATCTAAGTATCTTATATTCAAATAGAGCAGCATGTTACCTAAAAGAAGGAAACTGCAGTGGCTGCATTCAAGATTGTAACAG
Seq A exon
GGCTCTGGAACTTCATCCATTCTCTATGAAACCTCTTCTGAGGCGGGCGATGGCCTATGAAACTCTAGAGCAGTATGGGAAAGCTTATGTGGATTATAAAACAGTGTTGCAGATAGACTGTGGACTCCAGCTAGCAAATGACAGTGTTAACAG
Seq C2 exon
GCTATCAAGAATTTTAATGGAGCTGGATGGACCAAATTGGCGGGAGAAGCTGTCACCTATTCCTGCTGTGCCTGCTTCTGTGCCACTGCAAGCTTGGCATCCGGCAAAAGAGATGATCTCAAAACAAGCAGGAGACTCCAGCAGCCATCGCCAGCAGGGCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450_MULTIEX1-2/5=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.275
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=57.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAAATTGCAGATGATCTAAGT
R:
GATGGCTGCTGGAGTCTCCT
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)