RnoEX6032023 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75035427-75043802:+
Coord C1 exon
chr7:75035427-75035526
Coord A exon
chr7:75040341-75040493
Coord C2 exon
chr7:75043642-75043802
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTGATATCTTGTCCTCTTAGGGC
3' ss Score
9.63
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAAGTGAAAATGCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCGTGCTACCTCAAAGAAGGAAACTGCAGGGGCTGCATCCAGGACTGTGACAG
Seq A exon
GGCTCTGGAACTTCAGCCGTTCGCAGTGAAGCCTCTTTTACGGCGAGCGATGGCCTATGAGACTTTAGAGCAGTACAGGAGCGCGTATGTGGACTATATAACAGTGCTGAAGATAGACTGTAGGATCCAGCTGGCCAGCGACAGCGTTAACAG
Seq C2 exon
AATAACAAGAATCTTAACAGAGCTAGATGGACCAAAATGGCGGGAGAGACTGCCCCCCATCCCGGCTGTGCCTGCATCTGAGCCTCTGAGAGTTTGGCACCCTGCTGCTGAGACCCCAGACCAAGATCCGTGTCCCAACAGCTGCACGCCCACCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'21-17,'21-15,23-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.244
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
PF134141=TPR_11=PD(7.9=11.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGAAAATGCGGATGAGCT
R:
GCTGTTGGGACACGGATCTTG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]