MmuEX6053255 @ mm9
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36140855-36151321:+
Coord C1 exon
chr15:36140855-36140954
Coord A exon
chr15:36145922-36146074
Coord C2 exon
chr15:36151161-36151321
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTACTGTCTTGTCCTCTTAGGGC
3' ss Score
10.41
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAAGTGCAAATGCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCATGCTACCTCAAAGAAGGGAACTGCAGGGACTGCATCCAGGATTGTAACAG
Seq A exon
GGCTCTGGAACTTCATCCGTTCTCAGTGAAGCCTCTTCTGCGGCGAGCAATGGCCTATGAGACCTTAGAGCAATACAGGAACGCATATGTGGACTATAAAACAGTGCTGCAGATAGATTGTGGGATCCAGCTGGCGAGCGACAGTGCTAACAG
Seq C2 exon
AATAGCACGAATCTTAACAGAGCTAGATGGATCAAAATGGCGGGAGAGACTGCCACCCATCCCAGCTGTACCCACATCTGAGCCACTGCGAGTTTGGCTCCCTGCTGCAGAGACCCCAGACCAAGATCCCTGTCCCAACAACTGCATGCCGAGCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=59.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCAAATGCGGATGAGC
R:
GCAGTTGTTGGGACAGGGATC
Band lengths:
245-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: