BtaEX0034189 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032544 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr14:66334533-66345664:-
Coord C1 exon
chr14:66345565-66345664
Coord A exon
chr14:66339311-66339463
Coord C2 exon
chr14:66334533-66334699
Length
153 bp
Sequences
Splice sites
3' ss Seq
AATATTTCTGTCTCCTTTAGGGC
3' ss Score
11.47
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GAAGTGGAAGTGCAGCCGATCTAAGTATCTTATATTCAAATAGAGCAGCATGTTACCTCAAAGACGGAAACTGCAGTGGCTGTATTCAGGATTGTAACAG
Seq A exon
GGCCCTGGAGCTTCATCCATTCTCTATCAAGCCTCTTCTTCGACGAGCAATGGCCTATGAAACTGTAGAGCAGTATCAGAAAGCTTACGTGGATTATAAAACAGTGTTGCAAATAGACTGTGGAATCCAGTTAGCAAATGACAGTATTAACAG
Seq C2 exon
GATAACAAAGATTTTGATCGCTCTGGATGGCCCAAACTGGCGGGAGAAGCTGCCACCCATACCTGCTGTGCCCACCTCCACACAAGTCCGGGCTTGGCGGCCTGCAGCAGAGACGCCCCCAGACCAAGTGGGAGATTCCTGTTGCCATCCCCAGCCGGGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032544-'18-24,'18-21,19-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.386
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(80.5=100)
A:
PF134141=TPR_11=PD(14.6=11.5),PF0051523=TPR_1=WD(100=59.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAGTGCAGCCGATCTA
R:
TGGCAACAGGAATCTCCCACT
Band lengths:
245-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development