HsaEX0067243 @ hg19
Exon Skipping
Gene
ENSG00000125733 | TRIP10
Description
thyroid hormone receptor interactor 10 [Source:HGNC Symbol;Acc:12304]
Coordinates
chr19:6741021-6743125:+
Coord C1 exon
chr19:6741021-6741136
Coord A exon
chr19:6741236-6741292
Coord C2 exon
chr19:6742978-6743125
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTACCTCTGTCTCCCCTTAGGAG
3' ss Score
12.05
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GATCAGTTCGAGGTGCTCGAGCGCCACACGCAGTGGGGGCTGGACCTGTTGGACAGATATGTAAAGTTCGTGAAAGAACGCACCGAAGTGGAACAGGCTTACGCCAAACAACTGCG
Seq A exon
GAGCCTGGTGAAAAAATATCTGCCCAAGAGACCTGCCAAGGATGATCCTGAGTCCAA
Seq C2 exon
ATTCAGCCAGCAACAGTCCTTCGTACAGATTCTCCAGGAGGTGAATGACTTTGCAGGCCAGCGGGAGCTGGTGGCTGAGAACCTCAGTGTCCGTGTATGTCTTGAGCTGACCAAGTACTCACAAGAGATGAAACAGGAGAGGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125733_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.350 C2=0.120
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
PF0061118=FCH=FE(20.2=100)
C2:
PF0061118=FCH=PD(29.8=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTGAAAGAACGCACCGAA
R:
ACACGGACACTGAGGTTCTCA
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)