MmuEX0048981 @ mm10
Exon Skipping
Gene
ENSMUSG00000019487 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:MGI Symbol;Acc:MGI:2146901]
Coordinates
chr17:57250742-57253409:+
Coord C1 exon
chr17:57250742-57250857
Coord A exon
chr17:57250955-57251011
Coord C2 exon
chr17:57253262-57253409
Length
57 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGTCCCAACCTTTAGGAG
3' ss Score
9.74
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GATCAGTTTGAGGTGCTGGAACGCCACACGCAGTGGGGGCTGGATTTGTTGGACAAATACGTGAAGTTCGTGAAAGAACGCGCGGAGGTGGAGCAGGCTTATGCTAAGCAACTCCG
Seq A exon
GAGCCTGGTGAAAAAGTATCTTCCCAAGAGACCTACCAAAGATGACCCTGAAGTCAA
Seq C2 exon
GTTCAGCCAGCAGCAGTCATTTGTCCAGCTTCTCCAGGAGGTCAATGACTTCGCAGGCCAGAGAGAGCTGGTGGCTGAGAGCCTCGGTATCCGAGTGTGTCTGGAGCTGGCTAAGTATTCACAGGAGATGAAGCAGGAGAGGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019487_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.100
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
PF0061118=FCH=FE(20.2=100)
C2:
PF0061118=FCH=PD(29.8=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGGATTTGTTGGACAA
R:
GCGAAGTCATTGACCTCCTGG
Band lengths:
135-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types