GgaEX1025315 @ galGal4
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12830420-12842028:-
Coord C1 exon
chr8:12841913-12842028
Coord A exon
chr8:12832062-12832115
Coord C2 exon
chr8:12830420-12830567
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCTTCCTTAATAGAAA
3' ss Score
10.38
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GATCAGTTCGATAACTTAGACAAGCATACACAGTGGGGCATTGACTTCTTGGAGAAATATGCAAAATTTGTAAAAGAAAGGATAGAAATTGAGCAAAACTATGCAAAACAACTGAG
Seq A exon
AAATCTGGTTAAGAAGTACTGTCCTAAACGTTCATCCAAAGATGAGGAACCCAG
Seq C2 exon
GTTTACTTCATGTATTGCCTTTTTTAACATCCTTAACGAGCTGAATGACTATGCAGGACAACGTGAAGTAGTTGCAGAAGAAATGGGACACAGAGTCTATGGAGAATTAATGAGATACTCACATGATCTAAAAACTGAGAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'2-7,'2-4,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(41.3=100)
A:
PF0061118=FCH=FE(19.6=100)
C2:
PF0061118=FCH=PD(30.4=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTGGGGCATTGACTTC
R:
CCTGCATAGTCATTCAGCTCGT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]