RnoEX0036533 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226719307-226742081:-
Coord C1 exon
chr2:226741966-226742081
Coord A exon
chr2:226720491-226720544
Coord C2 exon
chr2:226719307-226719454
Length
54 bp
Sequences
Splice sites
3' ss Seq
CAAAACTTTTCTTCCTCTAGAAA
3' ss Score
8.38
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATCAGTTCGATAGCTTAGATAAGCATACCCAATGGGGAATTGACTTCTTGGAAAGATACGCCAAGTTTGTTAAAGAGAGAATTGAAATTGAACAGAACTATGCGAAACAATTGAG
Seq A exon
AAATTTGGTTAAGAAGTACTGTCCCAAACGCTCGTCCAAAGATGAAGAGCCAAG
Seq C2 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCACACAGAGTATATGGTGAACTAATGAGATATGCCCATGACCTGAAAACGGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'9-7,'9-5,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0007822=RVT_1=PD(40.0=82.1),PF0061118=FCH=FE(40.9=100)
A:
PF0061118=FCH=FE(19.4=100)
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTCTTGGAAAGATACGCCA
R:
CGCTGTCCTGCATAGTCGTTT
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]