HsaEX0026119 @ hg38
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93499468-93523491:+
Coord C1 exon
chr1:93499468-93499583
Coord A exon
chr1:93522082-93522135
Coord C2 exon
chr1:93523344-93523491
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAAAAATCTTCTTCCTATAGAAA
3' ss Score
7.07
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GATCAGTTCGACAGCTTAGACAAGCATACACAATGGGGAATTGACTTCTTGGAAAGATATGCCAAATTTGTTAAAGAGAGGATAGAAATTGAACAGAACTATGCGAAACAATTGAG
Seq A exon
AAATCTGGTTAAGAAGTACTGCCCCAAACGTTCATCCAAAGATGAAGAGCCACG
Seq C2 exon
GTTTACCTCGTGTGTAGCCTTTTTTAATATCCTTAATGAGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAAGAAATGGCGCACAGAGTGTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942_MULTIEX1-2/4=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.9=100)
A:
PF0061118=FCH=FE(19.4=100)
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAATTGACTTCTTGGAAAGA
R:
TCTCGCTGTCCTGCATAGTCA
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development