MmuEX0019448 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122272513-122293161:-
Coord C1 exon
chr3:122293046-122293161
Coord A exon
chr3:122273809-122273862
Coord C2 exon
chr3:122272513-122272660
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCAAAACTTTTTTCTTCTAGAAA
3' ss Score
7.96
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GATCAGTTCGACAGCTTAGATAAGCATACCCAATGGGGAATTGACTTCTTGGAAAGATATGCCAAGTTTGTTAAAGAGAGAATTGAAATTGAACAGAACTATGCGAAACAATTGAG
Seq A exon
AAATCTGGTTAAGAAGTACTGTCCCAAACGCTCCTCCAAAGATGAAGAGCCAAG
Seq C2 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCGCACAGAGTATATGGTGAATTAATGAGATATGCCCATGATCTGAAAACGGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'6-8,'6-5,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(48.1=100),PF115563=EBA-175_VI=PU(33.3=46.2)
A:
PF0061118=FCH=FE(22.8=100),PF115563=EBA-175_VI=FE(33.3=100)
C2:
PF0061118=FCH=PD(30.4=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAATTGACTTCTTGGAAAGA
R:
CGCTGTCCTGCATAGTCGTTT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: