DreEX0033195 @ danRer10
Exon Skipping
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15006692-15018958:+
Coord C1 exon
chr8:15006692-15006807
Coord A exon
chr8:15013173-15013223
Coord C2 exon
chr8:15018811-15018958
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTGTTGTCCAACAGGAG
3' ss Score
10.71
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACCAGTTCGAGAATCTCGACAAACACACACAGTGGGGCATCGACTTCCTAGAGCGCTATGCAAAGTTTGTCAAGGAGCGTCTGGAGATCGAGCAGGCCTATGCAAAGCAGCTACG
Seq A exon
GAGTTTGGTTAAGAAGTATTGCCCAAAGCGCTCCAAAGACGATGAGCCCAG
Seq C2 exon
GTTCACGTCTTGTCTGTCATTCTACGCCATCCTGAATGAGCTGAATGACTATGCTGGTCAGCGAGAGGTTGTTGCAGAGGAGATGGGCCACAAAGTGTATGGAGAGCTCATGAGATACTCACAAGACCTGAAGGGAGAGAGGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131-'3-5,'3-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.060
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(41.3=100)
A:
PF0061118=FCH=FE(18.5=100)
C2:
PF0061118=FCH=PD(30.4=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCAAGGAGCGTCTGGAGA
R:
CCCATCTCCTCTGCAACAACC
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]