BtaEX0014841 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50124825-50146915:-
Coord C1 exon
chr3:50146800-50146915
Coord A exon
chr3:50126252-50126305
Coord C2 exon
chr3:50124825-50124972
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTAAAAAATCTTCCTGTAGAAA
3' ss Score
6.98
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATCAGTTCGACAGCTTAGACAAGCATACACAATGGGGAATTGACTTCTTGGAAAGATATGCCAAATTTGTTAAAGAGAGGATAGAAATTGAACAGAACTATGCGAAACAATTGAG
Seq A exon
AAATCTGGTTAAGAAGTACTGTCCCAAACGTTCCTCCAAAGATGAAGAGCCAAG
Seq C2 exon
GTTTACTTCGTGTATAGCCTTTTTTAACATCCTTAACGAGTTAAATGACTATGCAGGACAGCGAGAAGTAGTAGCAGAAGAAATGGCCCACAGAGTTTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383_MULTIEX1-1/9=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.9=100)
A:
PF0061118=FCH=FE(19.4=100)
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAATTGACTTCTTGGAAAGA
R:
TCTCGCTGTCCTGCATAGTCA
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development