MmuEX0019448 @ mm10
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122569595-122590243:-
Coord C1 exon
chr3:122590128-122590243
Coord A exon
chr3:122570891-122570944
Coord C2 exon
chr3:122569595-122569742
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCAAAACTTTTTTCTTCTAGAAA
3' ss Score
7.96
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GATCAGTTCGACAGCTTAGATAAGCATACCCAATGGGGAATTGACTTCTTGGAAAGATATGCCAAGTTTGTTAAAGAGAGAATTGAAATTGAACAGAACTATGCGAAACAATTGAG
Seq A exon
AAATCTGGTTAAGAAGTACTGTCCCAAACGCTCCTCCAAAGATGAAGAGCCAAG
Seq C2 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCGCACAGAGTATATGGTGAATTAATGAGATATGCCCATGATCTGAAAACGGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'12-12,'12-9,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.9=100)
A:
PF0061118=FCH=FE(19.4=100)
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Skipping Isoform:
ENSMUST00000162947fB10160
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAATTGACTTCTTGGAAAGA
R:
CGCTGTCCTGCATAGTCGTTT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types