HsaEX0026119 @ hg19
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:93965025-93989048:+
Coord C1 exon
chr1:93965025-93965140
Coord A exon
chr1:93987639-93987692
Coord C2 exon
chr1:93988901-93989048
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAAAAATCTTCTTCCTATAGAAA
3' ss Score
7.07
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GATCAGTTCGACAGCTTAGACAAGCATACACAATGGGGAATTGACTTCTTGGAAAGATATGCCAAATTTGTTAAAGAGAGGATAGAAATTGAACAGAACTATGCGAAACAATTGAG
Seq A exon
AAATCTGGTTAAGAAGTACTGCCCCAAACGTTCATCCAAAGATGAAGAGCCACG
Seq C2 exon
GTTTACCTCGTGTGTAGCCTTTTTTAATATCCTTAATGAGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAAGAAATGGCGCACAGAGTGTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-'1-4,'1-1,2-4
Average complexity
S
Mappability confidence:
88%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.056
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(45.8=100),PF049318=DNA_pol_phi=FE(35.8=100),PF0765111=ANTH=FE(38.4=100)
A:
PF0061118=FCH=FE(21.7=100),PF049318=DNA_pol_phi=FE(17.0=100),PF0765111=ANTH=FE(18.2=100)
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAATTGACTTCTTGGAAAGA
R:
TCTCGCTGTCCTGCATAGTCA
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)