DreEX0081366 @ danRer10
Exon Skipping
Gene
ENSDARG00000005679 | trip10a
Description
thyroid hormone receptor interactor 10a [Source:ZFIN;Acc:ZDB-GENE-041114-105]
Coordinates
chr3:54209394-54220241:-
Coord C1 exon
chr3:54220126-54220241
Coord A exon
chr3:54214777-54214833
Coord C2 exon
chr3:54209394-54209541
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTCTGTTTGCCAGGAA
3' ss Score
10.26
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GACCAATATGACATTCTTGATAAGCACACACAGTCTGGCCTGGACCTGGTGGACAAATACATGAAGTTTGTAAAGGAGCGAACAGACATCGAACAGAATTATGCCAAGCAGCTAAG
Seq A exon
GAATTTAACCAAGAAATACAGCCCTAAACGAGGCAGCAAAGAAGAGCAAGAATGCAG
Seq C2 exon
ATTCTCCAATCACCAGGCCTTTCTGGACATCCTGAACGAGATGAACGATTACGCGGGCCAGAGAGAGCTGATCGCCGAGAACATGATGATAAATATCTGCGTCGAGCTCAACAAGTACCTGCAGGAGCTCAAACAGGAGCGCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005679_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.650 C2=0.020
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
PF0061118=FCH=FE(20.2=100)
C2:
PF0061118=FCH=PD(29.8=56.0),PF057016=WEMBL=PU(31.2=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCACACACAGTCTGGCC
R:
TCAGGATGTCCAGAAAGGCCT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]