GgaEX1025303 @ galGal4
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr17:5784965-5792241:-
Coord C1 exon
chr17:5792113-5792241
Coord A exon
chr17:5787686-5787742
Coord C2 exon
chr17:5784965-5785112
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTATTTGTTTTTAATTTTAGGAA
3' ss Score
10.61
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TTATTCCTTGCAGGACCAGTTTGACAATTTAGAAAAGCACACGCAGTGGGGTATTGATGTTCTGGAAAAATACATCAAGTTTGTCAAGGAAAGAACAGAGATTGAACTCAGCTATGCAAAGCAGCTTAG
Seq A exon
GAATCTTTCAAAGAAATATCAACCCAAAAAGAACTCCAAAGAAGAGGAAGAGTACAG
Seq C2 exon
GTACACATCAACTAGAGCCTTCCTAGCCACTTTAAATGAAATGAATGACTATGCCGGACAGCATGAGGTCATTTCAGAGAACATGACCTCTCTTATCATTGGAGAGTTAACTCGCTATGTGCAGGAGCTGAAACAAGAGAGGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.100
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(46.2=100)
A:
PF0061118=FCH=FE(20.4=100)
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Skipping Isoform:
ENSGALT00000006504fB7655
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGCTATGCAAAGCAGCT
R:
GCACATAGCGAGTTAACTCTCCA
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]