MmuEX0019437 @ mm10
Exon Skipping
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31084023-31105357:-
Coord C1 exon
chr2:31105242-31105357
Coord A exon
chr2:31097094-31097150
Coord C2 exon
chr2:31084023-31084085
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCATTTTGGTCTTAGGAA
3' ss Score
8.45
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GATCAGTTTGACAACTTGGAAAAACATACACAGTGGGGAATCGATATTCTTGAGAAATACATCAAGTTTGTCAAGGAGAGGACGGAGATTGAGCTCAGCTATGCCAAGCAACTCAG
Seq A exon
GAATCTTTCAAAGAAATACCAACCTAAGAAGAACTCGAAGGAAGAGGAGGAGTACAA
Seq C2 exon
AACTTCCATGATGGACGGAAGGCTCAGCAGCACATAGAAACGTGTTGGAAGCAACTGGAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415_MULTIEX1-2/11=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.252
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(42.4=97.3)
A:
PF0061118=FCH=FE(20.2=100),PF102754=Peptidase_C65=PU(9.6=50.0)
C2:
PF104814=CENP-F_N=FE(14.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAACATACACAGTGGGGA
R:
CTATGTGCTGCTGAGCCTTCC
Band lengths:
137-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types