HsaEX6063442 @ hg38
Exon Skipping
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr9:129978465-129994958:-
Coord C1 exon
chr9:129994843-129994958
Coord A exon
chr9:129979318-129979374
Coord C2 exon
chr9:129978465-129978612
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCATTTTTATTTCAGGAA
3' ss Score
10.26
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GATCAGTTTGACAACTTAGAAAAACACACACAGTGGGGAATTGATATTCTTGAGAAATATATCAAGTTTGTGAAAGAAAGGACAGAGATTGAACTCAGCTATGCAAAGCAACTCAG
Seq A exon
GAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAA
Seq C2 exon
GTATACGTCATGTAAAGCTTTCATTTCCAACCTGAACGAAATGAATGATTACGCAGGGCAGCATGAAGTTATCTCCGAGAACATGGCATCACAGATCATTGTGGACTTGGCACGCTATGTTCAGGAACTGAAACAGGAGAGGAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239-'7-12,'7-11,10-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.207 C2=0.089
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(12.7=77.8)
A:
PF0061118=FCH=FE(34.5=100),PF057016=WEMBL=PU(4.0=30.0)
C2:
PF0061118=FCH=PD(29.8=56.0),PF057016=WEMBL=PU(29.6=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGCTATGCAAAGCAACTCA
R:
GAACATAGCGTGCCAAGTCCA
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains