MmuEX0019437 @ mm9
Exon Skipping
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:30939543-30960877:-
Coord C1 exon
chr2:30960762-30960877
Coord A exon
chr2:30952614-30952670
Coord C2 exon
chr2:30939543-30939605
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCATTTTGGTCTTAGGAA
3' ss Score
8.45
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GATCAGTTTGACAACTTGGAAAAACATACACAGTGGGGAATCGATATTCTTGAGAAATACATCAAGTTTGTCAAGGAGAGGACGGAGATTGAGCTCAGCTATGCCAAGCAACTCAG
Seq A exon
GAATCTTTCAAAGAAATACCAACCTAAGAAGAACTCGAAGGAAGAGGAGGAGTACAA
Seq C2 exon
AACTTCCATGATGGACGGAAGGCTCAGCAGCACATAGAAACGTGTTGGAAGCAACTGGAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415_MULTIEX1-1/10=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.251
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100),PF0319410=LUC7=FE(27.0=100),PF093206=DUF1977=PU(55.1=97.4)
A:
PF0061118=FCH=FE(20.2=100),PF0319410=LUC7=FE(13.5=100),PF093206=DUF1977=FE(27.5=100),PF102754=Peptidase_C65=PU(9.6=50.0)
C2:
PF104814=CENP-F_N=FE(14.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAACATACACAGTGGGGA
R:
CTATGTGCTGCTGAGCCTTCC
Band lengths:
137-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: