DreEX0033177 @ danRer10
Exon Skipping
Gene
ENSDARG00000036156 | fnbp1a
Description
formin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-081105-105]
Coordinates
chr8:11586608-11599435:-
Coord C1 exon
chr8:11599320-11599435
Coord A exon
chr8:11587607-11587663
Coord C2 exon
chr8:11586608-11586755
Length
57 bp
Sequences
Splice sites
3' ss Seq
GCATATCTGTCTTATTTCAGGAA
3' ss Score
9.52
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATCAGTTTGATAATCTGGAGAAACACACTCAATGGGGCATTGAGTTTTTGGAGCGATACACCAAGTTTGTGAAGGAACGATCTGAGATCGAACTGAGCTATGCTAAACAGATCAG
Seq A exon
GAATCTGTCTAAGAAGTATCAGCTCAAGAAGAACTCGAAAGAAGAGGAGGAATACAA
Seq C2 exon
GTACACAACATGTCGAGCGTTTCTGATGACCTTAAATGAGCTGAACGACTACGCAGGCCAACACGAAGTCATTGCGGAAAACCTGTCCTCCCAGATCATCGCTGAACTGAGCCGCTACACCCAAGAACTAAAAGCTGAACGCAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036156-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.060
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
PF0061118=FCH=FE(20.2=100)
C2:
PF0061118=FCH=PD(29.8=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATTGAGTTTTTGGAGCG
R:
CTGCGTAGTCGTTCAGCTCAT
Band lengths:
137-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]