RnoEX0036507 @ rn6
Exon Skipping
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9926729-9936405:-
Coord C1 exon
chr3:9936217-9936405
Coord A exon
chr3:9927746-9927802
Coord C2 exon
chr3:9926729-9926876
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCATTTTCGTCTTAGGAA
3' ss Score
9.38
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AATGACCTTGAGCTCCTGGTCCTCCTGTTGGGGTTACTGGCGTGCACGGCCATGCCTGGCCAGTGCCCTACTGGATCAGTTTGACAACTTGGAAAAACACACACAGTGGGGAATCGACATTCTTGAGAAATACATCAAGTTCGTCAAGGAGAGAACGGAGATTGAGCTCAGCTATGCCAAACAGCTCAG
Seq A exon
GAATCTTTCAAAGAAATACCAACCCAAGAAGAACTCGAAGGAAGAAGAGGAATACAA
Seq C2 exon
GTACACGGCGTGTAAAGCGTTTCTTTCCACCCTGAATGAGTTGAATGACTACGCCGGGCAGCATGAGGTCATCTCCGAGAACATGACGTCACAGATCACGGTGGACCTGGTGCGCTACGTACAGGAGCTGAAGCAGGAGAGGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(47.8=95.7)
A:
PF0061118=FCH=FE(20.7=100)
C2:
PF0061118=FCH=PD(30.4=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGTGGGGAATCGACAT
R:
CCCGGCGTAGTCATTCAACTC
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]