BtaEX6046666 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100361051-100374772:-
Coord C1 exon
chr11:100374657-100374772
Coord A exon
chr11:100361899-100361955
Coord C2 exon
chr11:100361051-100361198
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCCTTTTTGTTTTAGGAA
3' ss Score
13.33
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GATCAATTTGACAACTTAGAAAAACACACACAGTGGGGAATTGATATTCTTGAGAAATACATCAAATTTGTAAAGGAGAGGACAGAGATTGAACTCAGCTATGCAAAGCAACTCAG
Seq A exon
GAACCTTTCAAAGAAATACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAG
Seq C2 exon
GTATACGGCTTGCCAAGCCTTCCTTGCCACCCTGAATGAAATGAACGATTATGCTGGGCAGCATGAACTCATCTCCGAGAATATGACCTCTCAGATCATTGTGGAGTTAGTGCGCTACGTCCAGGAACTGAAGCAGGAGAGGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313-'1-6,'1-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.070
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
PF0061118=FCH=FE(20.2=100)
C2:
PF078236=CPDase=PU(3.8=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGCTATGCAAAGCAACTCA
R:
GACGTAGCGCACTAACTCCAC
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]