RnoEX0093815 @ rn6
Exon Skipping
Gene
ENSRNOG00000055524 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:RGD Symbol;Acc:621145]
Coordinates
chr9:9698789-9701131:-
Coord C1 exon
chr9:9701016-9701131
Coord A exon
chr9:9700868-9700924
Coord C2 exon
chr9:9698789-9698936
Length
57 bp
Sequences
Splice sites
3' ss Seq
CATCCTGCCTCTGTCCTTAGGAG
3' ss Score
11.5
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GATCAGTTTGAGGTGCTGGAACGCCACACACAGTGGGGGCTGGATCTGTTGGACAAATACGTGAAGTTCGTGAAAGAACGCGTCGAGGTGGAGCAGTCTTATGCGAAGCAACTCAG
Seq A exon
GAGTCTGGTGAAAAAGTATCTTCCCAAGAGACCTGCCAAAGATGACCCCGAAATCAA
Seq C2 exon
GTTTAGCCAGCAACAGTCATTTGTCCAGCTTCTCCAGGAGGTCAATGATTTTGCAGGCCAACGAGAGCTGGTGGCCGAGAGCCTTGGCATCCGAGTGTGTCTGGAGCTGGCTAAGTATTCACAGGAGATGAAGCAAGAGAGGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055524-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.217 C2=0.100
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
PF0061118=FCH=FE(20.2=100)
C2:
PF0061118=FCH=PD(29.8=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGTGGAGCAGTCTTATGC
R:
TTAGCCAGCTCCAGACACACT
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]