BtaEX0037718 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047424 | TRIP10
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYE4]
Coordinates
chr7:18969108-18970399:-
Coord C1 exon
chr7:18970277-18970399
Coord A exon
chr7:18970136-18970192
Coord C2 exon
chr7:18969108-18969255
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTCCTACCTCTCTCCGTAGGAG
3' ss Score
11.9
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTGCTAGGATCAGTTTGAGGTGCTCGAGCGGCACACGCAGTGGGGTCTGGACCTGTTGGACAGATACGTGAAGTTCGTGAAAGAGCGGACGGAGGTGGAGCAGGCTTATGCAAAGCAACTGCG
Seq A exon
GAGCCTGGTGAAAAAATACATGCCCAAAAGACCTGCCAAAGATGACCCTGAATCCAA
Seq C2 exon
GTTCAGCCAGCAACAGTCCTTCGTGCAGATTCTGCAGGAGGTGAATGATTTTGCCGGCCAGCGGGAGCTGGTGGCTGAGAACCTCAGCGTGCGTGTATGTCTGGAGCTGGCCAAGTACTCGCAGGAGATGAAACAGGAGAGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047424-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.700 C2=0.120
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(44.2=97.4)
A:
PF0061118=FCH=FE(22.1=100)
C2:
PF0061118=FCH=PD(32.6=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTTTGAGGTGCTCGAGC
R:
AAGGACTGTTGCTGGCTGAAC
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development