HsaEX0067811 @ hg19
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39175709-39177998:+
Coord C1 exon
chr3:39175709-39175819
Coord A exon
chr3:39176584-39176665
Coord C2 exon
chr3:39177848-39177998
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTGTTTTCTGATAGTTG
3' ss Score
8.78
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGATGCTGGAGCTGGCGCAGCTCTACCTGCTCCAGGGGCACCTGGACCTGTGTGAGCAGCACTGTGCCATCCTCCTGCAGACTGAGCAGAACCATGAGACCGCTTCTGTG
Seq A exon
TTGATGGCTGACCTGATGTTTAGAAAACAGAAACATGAAGCGGCCATCAATCTTTACCACCAAGTCTTGGAGAAAGCGCCAG
Seq C2 exon
ACAATTTTTTGGTATTGCATAAATTAATCGATCTGCTAAGAAGAAGTGGAAAACTTGAAGACATTCCTGCCTTCTTTGAATTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAACCAGGGTTCAATTACTGCAGAGGTATCTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-'32-32,'32-30,36-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
PF145591=TPR_19=PD(5.9=14.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCCTGCAGACTGAGCA
R:
GAACCCTGGTTCCAAAGGCAC
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)