BtaEX6093518 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12511264-12512966:+
Coord C1 exon
chr22:12511264-12511374
Coord A exon
chr22:12511983-12512064
Coord C2 exon
chr22:12512816-12512966
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCATCATGTGAATTCAATAGGTG
3' ss Score
5.12
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGGTGCTGGAGCTGGCGAGGCTCTACCTGCTGCAGGGACACCTGGACCTGTGTGAGCAGCACTGTGCCGACCTCCTGCAGACTGAGAAGAACCACGAGGCAGCCTCCGTG
Seq A exon
GTGATGGCTGACCTGATGTTTAGAAGACAGAAATACGAGGCTGCCATCAACCTCTACCACCAAGTCCTGGAGAAAGCACCAG
Seq C2 exon
ACAATTTTCCTGTATTGAACAAACTAATCGATCTGCTACGAAGAAGTGGCAAACTTGAGGACGCCCCTGCCGTCTTTGAATTGGCCGAGAAGATGTCCAGCCGGGTGCCTTTGGAGCCAGGGTTCAACTTCTGCAGAGGCATCTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477-'22-31,'22-29,23-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
PF145591=TPR_19=PD(5.9=14.3),PF134321=TPR_16=PU(39.7=96.4)
C2:
PF134321=TPR_16=PD(58.8=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAAGAACCACGAGGCAG
R:
TGCCTCTGCAGAAGTTGAACC
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]